Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein yckc, rdd family | SAMN03003324_03537 | Not Available | Positive | 3885668 - 3886270 | 22566.1 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | SAMN03003324_03538 | Not Available | Positive | 3886337 - 3888307 | 72916.8 |
| alpha/beta hydrolase family protein | SAMN03003324_03539 | Not Available | Negative | 3888304 - 3889152 | 32069.7 |
| glutamyl-trna reductase | SAMN03003324_03540 | Not Available | Positive | 3889327 - 3890553 | 46538.7 |
| hydroxymethylbilane synthase | SAMN03003324_03541 | Not Available | Positive | 3890747 - 3892327 | 59251.1 |
| porphobilinogen synthase | SAMN03003324_03542 | Not Available | Positive | 3892342 - 3893310 | 35835.2 |
| glutamate-1-semialdehyde 2,1-aminomutase | SAMN03003324_03543 | Not Available | Positive | 3893312 - 3894685 | 50127.4 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN03003324_03544 | Not Available | Positive | 3894815 - 3895582 | 28521.6 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN03003324_03545 | Not Available | Positive | 3895588 - 3896295 | 27485.5 |
| hypothetical protein | SAMN03003324_03546 | Not Available | Positive | 3896295 - 3896810 | 19314.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

