Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | SAMN03003324_03527 | Not Available | Positive | 3874591 - 3875085 | 17988.7 |
| topoisomerase-4 subunit a | SAMN03003324_03528 | Not Available | Positive | 3875155 - 3878244 | 115662.0 |
| hupe / urej protein | SAMN03003324_03529 | Not Available | Negative | 3878241 - 3878828 | 21912.6 |
| hypothetical protein | SAMN03003324_03530 | Not Available | Negative | 3878984 - 3880033 | 39013.3 |
| hmuy protein | SAMN03003324_03531 | Not Available | Positive | 3880168 - 3881274 | 40828.9 |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN03003324_03532 | Not Available | Negative | 3881288 - 3882175 | 33779.5 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN03003324_03533 | Not Available | Negative | 3882196 - 3882948 | 28168.1 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN03003324_03534 | Not Available | Negative | 3882945 - 3883679 | 26045.7 |
| phage shock protein c (pspc) family protein | SAMN03003324_03535 | Not Available | Positive | 3883959 - 3884645 | 26252.6 |
| hypothetical protein | SAMN03003324_03536 | Not Available | Positive | 3884705 - 3885664 | 35172.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

