Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylulokinase | SAMN03003324_03517 | Not Available | Negative | 3856104 - 3857576 | 53828.1 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | SAMN03003324_03518 | Not Available | Negative | 3857834 - 3859078 | 43774.4 |
| mannose-6-phosphate isomerase, type 2 | SAMN03003324_03519 | Not Available | Positive | 3859616 - 3860113 | 18804.9 |
| stearoyl-coa desaturase (delta-9 desaturase) | SAMN03003324_03520 | Not Available | Positive | 3860374 - 3861006 | 25334.5 |
| atp-dependent rna helicase rhle | SAMN03003324_03521 | Not Available | Negative | 3861098 - 3862423 | 48356.6 |
| basic amino acid/polyamine antiporter, apa family | SAMN03003324_03522 | Not Available | Negative | 3862551 - 3863903 | 49156.6 |
| topoisomerase-4 subunit b | SAMN03003324_03523 | Not Available | Positive | 3864012 - 3865922 | 72176.9 |
| membrane protein | SAMN03003324_03524 | Not Available | Negative | 3865919 - 3866932 | 36812.7 |
| outer membrane protein assembly factor bama | SAMN03003324_03525 | Not Available | Negative | 3866941 - 3869271 | 87791.1 |
| family of unknown function | SAMN03003324_03526 | Not Available | Negative | 3869290 - 3874323 | 185703.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

