Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron (metal) dependent repressor, dtxr family | SAMN03003324_03507 | Not Available | Negative | 3845621 - 3846280 | 24314.5 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN03003324_03508 | Not Available | Positive | 3846396 - 3848651 | 84604.4 |
| integral membrane protein, ykoy family | SAMN03003324_03509 | Not Available | Positive | 3848722 - 3849492 | 28619.0 |
| colicin import membrane protein | SAMN03003324_03510 | Not Available | Positive | 3849635 - 3850123 | 17651.2 |
| lactoylglutathione lyase | SAMN03003324_03511 | Not Available | Positive | 3850208 - 3850681 | 17625.3 |
| sodium/proton antiporter, nhaa family (tc 2.a.33.1.1) | SAMN03003324_03512 | Not Available | Positive | 3850688 - 3851998 | 47498.1 |
| hypothetical protein | SAMN03003324_03513 | Not Available | Positive | 3852066 - 3852374 | 11326.4 |
| response regulator receiver domain-containing protein | SAMN03003324_03514 | Not Available | Positive | 3852525 - 3852908 | 14581.8 |
| solute:na+ symporter, sss family | SAMN03003324_03515 | Not Available | Negative | 3853021 - 3854709 | 61437.4 |
| xylose isomerase | SAMN03003324_03516 | Not Available | Negative | 3854739 - 3856070 | 49666.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

