Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein tolc | SAMN03003324_00286 | Not Available | Negative | 300954 - 302372 | 54004.1 |
| multidrug resistance efflux pump | SAMN03003324_00287 | Not Available | Negative | 302382 - 303743 | 50853.1 |
| abc transporter transmembrane region | SAMN03003324_00288 | Not Available | Negative | 303736 - 304743 | 37760.9 |
| hypothetical protein | SAMN03003324_00289 | Not Available | Negative | 304797 - 305147 | 13297.1 |
| tetratricopeptide repeat-containing protein | SAMN03003324_00290 | Not Available | Positive | 305500 - 307203 | 66171.6 |
| uncharacterized iron-regulated membrane protein | SAMN03003324_00291 | Not Available | Negative | 307224 - 308390 | 44846.9 |
| iron complex outermembrane recepter protein | SAMN03003324_00292 | Not Available | Negative | 308443 - 311031 | 95715.7 |
| fecr family protein | SAMN03003324_00293 | Not Available | Negative | 311140 - 312102 | 36787.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_00294 | Not Available | Negative | 312162 - 312716 | 21836.3 |
| iron complex outermembrane recepter protein | SAMN03003324_00295 | Not Available | Positive | 313193 - 315859 | 96766.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

