Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_03486 | Not Available | Negative | 3818200 - 3818754 | 21905.1 |
| o-6-methylguanine dna methyltransferase | SAMN03003324_03487 | Not Available | Positive | 3819015 - 3819635 | 23290.0 |
| glycosyl hydrolases family 43 | SAMN03003324_03488 | Not Available | Positive | 3819892 - 3821520 | 59612.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_03489 | Not Available | Positive | 3821568 - 3824687 | 112920.0 |
| starch-binding associating with outer membrane | SAMN03003324_03490 | Not Available | Positive | 3824700 - 3826208 | 55942.0 |
| pas domain-containing protein | SAMN03003324_03491 | Not Available | Negative | 3826282 - 3827547 | 47798.8 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN03003324_03492 | Not Available | Negative | 3827531 - 3828901 | 51403.5 |
| putative abc transport system permease protein | SAMN03003324_03493 | Not Available | Negative | 3828920 - 3830098 | 44384.1 |
| putative abc transport system permease protein | SAMN03003324_03494 | Not Available | Negative | 3830126 - 3831367 | 46711.3 |
| putative abc transport system atp-binding protein | SAMN03003324_03495 | Not Available | Negative | 3831376 - 3832041 | 24399.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

