Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| taqi-like c-terminal specificity domain-containing protein | SAMN03003324_03476 | Not Available | Positive | 3804026 - 3806953 | 114467.0 |
| hypothetical protein | SAMN03003324_03477 | Not Available | Positive | 3806934 - 3807653 | 28374.5 |
| recombinase | SAMN03003324_03478 | Not Available | Negative | 3808386 - 3808715 | 12617.5 |
| hypothetical protein | SAMN03003324_03479 | Not Available | Negative | 3808699 - 3809061 | 13634.8 |
| glyoxalase-like domain-containing protein | SAMN03003324_03480 | Not Available | Positive | 3809077 - 3809526 | 16885.2 |
| glycerophosphoryl diester phosphodiesterase | SAMN03003324_03481 | Not Available | Negative | 3809898 - 3810734 | 31460.3 |
| calcineurin-like phosphoesterase | SAMN03003324_03482 | Not Available | Negative | 3810745 - 3812031 | 48760.4 |
| starch-binding associating with outer membrane | SAMN03003324_03483 | Not Available | Negative | 3812048 - 3813520 | 54953.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_03484 | Not Available | Negative | 3813532 - 3816984 | 127163.0 |
| fecr family protein | SAMN03003324_03485 | Not Available | Negative | 3817084 - 3818112 | 38788.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

