Pedobacter antarcticus strain ATCC 51969

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter antarcticus strain ATCC 51969 is a notable bacterial species characterized by the presence of flagella, facilitating motility. This organism has a single replicon, which indicates a simplified genomic structure that may contribute to its adaptability in various environments. The genomic data for this strain is cataloged under the accession number FONS00000000.1. As a member of the Pedobacter genus, P. antarcticus is typically associated with polar regions, particularly Antarctica, where it plays a role in the microbial communities of extreme environments. The ability to thrive in such conditions suggests that this bacterium possesses unique biochemical and physiological adaptations. The presence of flagella is particularly significant, as it allows for movement in response to environmental stimuli, which can be crucial for survival in nutrient-scarce habitats. The ecological role of Pedobacter antarcticus strain ATCC 51969 is likely linked to organic matter decomposition and nutrient cycling in its native habitat. By participating in these processes, this bacterium contributes to the overall health and stability of the polar ecosystems. Understanding the traits and behaviors of this strain can provide insights into microbial life in extreme conditions and its implications for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter antarcticus
Strainstrain ATCC 51969

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter antarcticus strain ATCC 51969 genome assembly, contig:

Gene Summary

Adenine Count

1362221 bp

Thymine Count

1361672 bp

Guanine Count

914548 bp

Cytosine Count

930759 bp

Genome Length

4570120 bp

Protein-coding Genes

4074 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
undecaprenyl-diphosphataseSAMN03003324_03456Not AvailablePositive3778750 - 377954429136.6
trna pseudouridine synthase bSAMN03003324_03457Not AvailablePositive3779578 - 378031827468.0
uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domainsSAMN03003324_03458Not AvailablePositive3780424 - 378118527325.4
riboflavin kinase / fmn adenylyltransferaseSAMN03003324_03459Not AvailablePositive3781197 - 378214135755.1
transporter, cpa2 family (tc 2.a.37)SAMN03003324_03460Not AvailablePositive3782600 - 378482882147.8
hypothetical proteinSAMN03003324_03461Not AvailablePositive3784871 - 378594441377.6
threonine/homoserine/homoserine lactone efflux proteinSAMN03003324_03462Not AvailableNegative3786005 - 378662523344.1
excinuclease abc subunit aSAMN03003324_03463Not AvailableNegative3786716 - 3789520103927.0
rna polymerase, sigma subunit, ecf familySAMN03003324_03464Not AvailablePositive3789784 - 379035922451.3
hypothetical proteinSAMN03003324_03465Not AvailablePositive3790461 - 37906467003.04

Displaying genes 3451 – 3460 of 4162 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.