Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyl-diphosphatase | SAMN03003324_03456 | Not Available | Positive | 3778750 - 3779544 | 29136.6 |
| trna pseudouridine synthase b | SAMN03003324_03457 | Not Available | Positive | 3779578 - 3780318 | 27468.0 |
| uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domains | SAMN03003324_03458 | Not Available | Positive | 3780424 - 3781185 | 27325.4 |
| riboflavin kinase / fmn adenylyltransferase | SAMN03003324_03459 | Not Available | Positive | 3781197 - 3782141 | 35755.1 |
| transporter, cpa2 family (tc 2.a.37) | SAMN03003324_03460 | Not Available | Positive | 3782600 - 3784828 | 82147.8 |
| hypothetical protein | SAMN03003324_03461 | Not Available | Positive | 3784871 - 3785944 | 41377.6 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN03003324_03462 | Not Available | Negative | 3786005 - 3786625 | 23344.1 |
| excinuclease abc subunit a | SAMN03003324_03463 | Not Available | Negative | 3786716 - 3789520 | 103927.0 |
| rna polymerase, sigma subunit, ecf family | SAMN03003324_03464 | Not Available | Positive | 3789784 - 3790359 | 22451.3 |
| hypothetical protein | SAMN03003324_03465 | Not Available | Positive | 3790461 - 3790646 | 7003.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

