Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN03003324_03386 | Not Available | Negative | 3697225 - 3698691 | 55858.1 |
| helix-turn-helix domain-containing protein | SAMN03003324_03387 | Not Available | Negative | 3698776 - 3699084 | 12160.8 |
| helix-turn-helix domain-containing protein | SAMN03003324_03388 | Not Available | Negative | 3699109 - 3699462 | 13969.8 |
| rtec protein | SAMN03003324_03389 | Not Available | Negative | 3699714 - 3700559 | 33001.6 |
| putative f0f1-atpase subunit ca2+/mg2+ transporter | SAMN03003324_03390 | Not Available | Negative | 3700932 - 3701153 | 8213.08 |
| penicillin-binding protein 1a | SAMN03003324_03391 | Not Available | Positive | 3701417 - 3703642 | 83113.9 |
| excinuclease abc subunit c | SAMN03003324_03392 | Not Available | Positive | 3703643 - 3705448 | 69155.8 |
| integrase core domain-containing protein | SAMN03003324_03393 | Not Available | Negative | 3705887 - 3706151 | 10159.0 |
| glucosamine-6-phosphate deaminase | SAMN03003324_03394 | Not Available | Positive | 3706152 - 3706340 | 7544.74 |
| hypothetical protein | SAMN03003324_03395 | Not Available | Negative | 3706413 - 3707177 | 28121.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

