Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein tolc | SAMN03003324_03376 | Not Available | Positive | 3678966 - 3680348 | 51935.5 |
| multidrug efflux pump subunit acrb | SAMN03003324_03377 | Not Available | Positive | 3680367 - 3683525 | 115024.0 |
| rnd family efflux transporter, mfp subunit | SAMN03003324_03378 | Not Available | Positive | 3683529 - 3684632 | 40780.7 |
| hypothetical protein | SAMN03003324_03379 | Not Available | Positive | 3684638 - 3685069 | 16161.5 |
| rtec protein | SAMN03003324_03380 | Not Available | Positive | 3685340 - 3686164 | 32632.2 |
| helicase conserved c-terminal domain-containing protein | SAMN03003324_03381 | Not Available | Negative | 3686167 - 3691593 | 204997.0 |
| protein of unknown function | SAMN03003324_03382 | Not Available | Negative | 3691580 - 3692017 | 16841.7 |
| hypothetical protein | SAMN03003324_03383 | Not Available | Positive | 3692213 - 3694237 | 79163.0 |
| orf6n domain-containing protein | SAMN03003324_03384 | Not Available | Negative | 3694247 - 3695137 | 34234.3 |
| dna topoisomerase-3 | SAMN03003324_03385 | Not Available | Negative | 3695137 - 3697221 | 78445.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

