Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna m(6)a-1618 methyltransferase | SAMN03003324_03256 | Not Available | Negative | 3564247 - 3565200 | 35650.7 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_03257 | Not Available | Negative | 3565238 - 3565990 | 26241.4 |
| mfs transporter, fhs family, l-fucose permease | SAMN03003324_03258 | Not Available | Negative | 3566117 - 3567526 | 50843.8 |
| diacylglycerol kinase (atp) | SAMN03003324_03259 | Not Available | Positive | 3567697 - 3568056 | 12925.2 |
| dna replication and repair protein reco | SAMN03003324_03260 | Not Available | Positive | 3568046 - 3568771 | 28099.4 |
| Trna-val | Not Available | Not Available | Positive | 3568880 - 3568957 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 3569027 - 3569104 | Not Available |
| hypothetical protein | SAMN03003324_03263 | Not Available | Negative | 3569148 - 3571040 | 71609.3 |
| hypothetical protein | SAMN03003324_03264 | Not Available | Positive | 3571177 - 3571365 | 6928.69 |
| nucleotide-binding universal stress protein, uspa family | SAMN03003324_03265 | Not Available | Positive | 3571485 - 3572360 | 32512.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

