Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-sigma-k factor rska | SAMN03003324_03236 | Not Available | Positive | 3541570 - 3542409 | 31038.8 |
| nad(p)h-hydrate epimerase | SAMN03003324_03237 | Not Available | Negative | 3542402 - 3543895 | 54016.2 |
| excinuclease abc subunit a | SAMN03003324_03238 | Not Available | Negative | 3543907 - 3546750 | 105850.0 |
| start domain-containing protein | SAMN03003324_03239 | Not Available | Positive | 3547085 - 3547729 | 24028.2 |
| arac-type dna-binding protein | SAMN03003324_03240 | Not Available | Positive | 3547846 - 3548742 | 33900.9 |
| transaldolase | SAMN03003324_03241 | Not Available | Positive | 3548853 - 3549953 | 41860.7 |
| transglycosylase slt domain-containing protein | SAMN03003324_03242 | Not Available | Negative | 3550014 - 3550796 | 29403.8 |
| 23s rrna pseudouridine2605 synthase | SAMN03003324_03243 | Not Available | Positive | 3551016 - 3551187 | 6130.89 |
| integrase core domain-containing protein | SAMN03003324_03244 | Not Available | Positive | 3551190 - 3551456 | 10290.2 |
| isopenicillin n synthase | SAMN03003324_03245 | Not Available | Negative | 3551733 - 3552695 | 35772.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

