Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine aminotransferase apoenzyme | SAMN03003324_00256 | Not Available | Negative | 272505 - 273572 | 39422.5 |
| ribulose-phosphate 3-epimerase | SAMN03003324_00257 | Not Available | Negative | 273660 - 274334 | 24483.0 |
| polyribonucleotide nucleotidyltransferase | SAMN03003324_00258 | Not Available | Negative | 274472 - 276619 | 78029.1 |
| small subunit ribosomal protein s15 | SAMN03003324_00259 | Not Available | Negative | 276736 - 277038 | 11492.1 |
| thioesterase-3 | SAMN03003324_00260 | Not Available | Positive | 277272 - 277691 | 16172.7 |
| hypothetical protein | SAMN03003324_00261 | Not Available | Negative | 277996 - 278430 | 16485.1 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_00262 | Not Available | Negative | 278497 - 279078 | 22291.6 |
| d-alanine-d-alanine ligase | SAMN03003324_00263 | Not Available | Negative | 279085 - 280071 | 36442.8 |
| pasta domain, binds beta-lactams | SAMN03003324_00264 | Not Available | Positive | 280255 - 281028 | 27866.8 |
| upf0755 protein | SAMN03003324_00265 | Not Available | Positive | 281042 - 282097 | 40074.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

