Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein | SAMN03003324_03136 | Not Available | Negative | 3441723 - 3443105 | 50552.3 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN03003324_03137 | Not Available | Positive | 3443151 - 3443801 | 24944.4 |
| aconitase | SAMN03003324_03138 | Not Available | Positive | 3444087 - 3446354 | 81675.3 |
| beta-glucosidase | SAMN03003324_03139 | Not Available | Negative | 3446403 - 3447737 | 50105.5 |
| muts domain v | SAMN03003324_03140 | Not Available | Negative | 3447822 - 3449651 | 68616.5 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN03003324_03141 | Not Available | Positive | 3449753 - 3450226 | 18170.2 |
| hypothetical protein | SAMN03003324_03142 | Not Available | Positive | 3450293 - 3450418 | 4946.05 |
| hypothetical protein | SAMN03003324_03143 | Not Available | Negative | 3450490 - 3451029 | 19008.0 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN03003324_03144 | Not Available | Negative | 3451034 - 3451495 | 16649.7 |
| putative porin | SAMN03003324_03145 | Not Available | Negative | 3451624 - 3453711 | 80354.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

