Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyl-coa synthetase alpha subunit | SAMN03003324_03126 | Not Available | Negative | 3427599 - 3428471 | 29900.5 |
| atp-binding cassette, subfamily b | SAMN03003324_03127 | Not Available | Negative | 3428555 - 3430327 | 66802.9 |
| trna pseudouridine38-40 synthase | SAMN03003324_03128 | Not Available | Negative | 3430329 - 3431114 | 29272.9 |
| protein of unknown function | SAMN03003324_03129 | Not Available | Positive | 3431167 - 3431625 | 16817.2 |
| atp-dependent rna helicase dead | SAMN03003324_03130 | Not Available | Positive | 3431710 - 3433581 | 68856.4 |
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN03003324_03131 | Not Available | Negative | 3433962 - 3435659 | 61040.1 |
| iron complex outermembrane recepter protein | SAMN03003324_03132 | Not Available | Negative | 3435819 - 3438599 | 99917.3 |
| hypothetical protein | SAMN03003324_03133 | Not Available | Negative | 3438842 - 3439147 | 10989.3 |
| glycerol-3-phosphate dehydrogenase (nad(p)+) | SAMN03003324_03134 | Not Available | Negative | 3439269 - 3440249 | 36653.5 |
| hlyd family secretion protein | SAMN03003324_03135 | Not Available | Negative | 3440343 - 3441695 | 47876.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

