Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase zinc-ribbon domain-containing protein | SAMN03003324_03106 | Not Available | Positive | 3401635 - 3403539 | 74702.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_03107 | Not Available | Positive | 3403872 - 3406763 | 105655.0 |
| susd family protein | SAMN03003324_03108 | Not Available | Positive | 3406776 - 3408194 | 52688.1 |
| beta-glucosidase | SAMN03003324_03109 | Not Available | Positive | 3408252 - 3410546 | 84239.9 |
| glucosylceramidase | SAMN03003324_03110 | Not Available | Positive | 3410591 - 3412006 | 51668.6 |
| ribosomal large subunit pseudouridine synthase d | SAMN03003324_03111 | Not Available | Negative | 3412095 - 3412781 | 25963.6 |
| ketopantoate hydroxymethyltransferase | SAMN03003324_03112 | Not Available | Negative | 3412822 - 3413637 | 29308.6 |
| carbamoyl-phosphate synthase small subunit | SAMN03003324_03113 | Not Available | Positive | 3413895 - 3415007 | 40739.3 |
| abc-2 type transport system atp-binding protein | SAMN03003324_03114 | Not Available | Positive | 3415096 - 3415863 | 28461.2 |
| abc-2 type transport system permease protein | SAMN03003324_03115 | Not Available | Positive | 3415885 - 3416976 | 39808.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

