Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03066 | Not Available | Negative | 3352824 - 3353237 | 15815.2 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN03003324_03067 | Not Available | Negative | 3353347 - 3354123 | 29478.3 |
| putative endonuclease | SAMN03003324_03068 | Not Available | Positive | 3354256 - 3354606 | 13756.9 |
| hypothetical protein | SAMN03003324_03069 | Not Available | Positive | 3354621 - 3354995 | 14139.1 |
| penicillin-binding protein 1a | SAMN03003324_03070 | Not Available | Negative | 3355052 - 3357502 | 93228.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_03071 | Not Available | Positive | 3357937 - 3360366 | 90496.5 |
| susd family protein | SAMN03003324_03072 | Not Available | Negative | 3360675 - 3362210 | 56811.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_03073 | Not Available | Negative | 3362240 - 3365434 | 116533.0 |
| hypothetical protein | SAMN03003324_03074 | Not Available | Positive | 3366078 - 3367496 | 53095.5 |
| glucokinase | SAMN03003324_03075 | Not Available | Positive | 3367573 - 3368457 | 32071.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

