Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03006 | Not Available | Negative | 3282531 - 3283037 | 18896.7 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN03003324_03007 | Not Available | Negative | 3283110 - 3283532 | 15539.7 |
| hypothetical protein | SAMN03003324_03008 | Not Available | Negative | 3283552 - 3283944 | 14313.4 |
| helix-turn-helix | SAMN03003324_03009 | Not Available | Negative | 3284048 - 3284581 | 20386.4 |
| transcriptional regulator, asnc family | SAMN03003324_03010 | Not Available | Negative | 3284660 - 3285142 | 18067.9 |
| histidine decarboxylase | SAMN03003324_03011 | Not Available | Positive | 3285297 - 3286436 | 42766.2 |
| response regulator receiver domain-containing protein | SAMN03003324_03012 | Not Available | Negative | 3286423 - 3286827 | 15529.9 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN03003324_03013 | Not Available | Positive | 3287328 - 3288602 | 49132.6 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN03003324_03014 | Not Available | Negative | 3288586 - 3289248 | 24709.7 |
| murein l,d-transpeptidase ycbb/ykud | SAMN03003324_03015 | Not Available | Negative | 3289261 - 3290943 | 63301.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

