Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminodeoxyfutalosine synthase | SAMN03003324_00235 | Not Available | Negative | 250636 - 251832 | 46519.2 |
| lipocalin-like domain-containing protein | SAMN03003324_00236 | Not Available | Negative | 252012 - 252506 | 17841.1 |
| cystathionine gamma-synthase | SAMN03003324_00237 | Not Available | Positive | 252572 - 253687 | 40199.3 |
| o-acetylhomoserine sulfhydrylase | SAMN03003324_00239 | Not Available | Positive | 254163 - 255467 | 47490.1 |
| homoserine o-acetyltransferase | SAMN03003324_00240 | Not Available | Positive | 255474 - 256550 | 40194.9 |
| homoserine dehydrogenase | SAMN03003324_00241 | Not Available | Positive | 256551 - 257792 | 46545.7 |
| 2-oxoglutarate dehydrogenase e2 component (dihydrolipoamide succinyltransferase) | SAMN03003324_00242 | Not Available | Negative | 257849 - 259201 | 49033.6 |
| nicotinamide-nucleotide amidase | SAMN03003324_00243 | Not Available | Negative | 259254 - 260507 | 45602.2 |
| hypothetical protein | SAMN03003324_00244 | Not Available | Negative | 260514 - 263159 | 98352.6 |
| n-acetylmuramoyl-l-alanine amidase | SAMN03003324_00245 | Not Available | Positive | 263494 - 264336 | 31822.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

