Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_02986 | Not Available | Negative | 3254166 - 3256532 | 90189.2 |
| hypothetical protein | SAMN03003324_02987 | Not Available | Positive | 3256599 - 3257132 | 20236.6 |
| transcriptional regulator, tetr family | SAMN03003324_02988 | Not Available | Positive | 3257360 - 3257953 | 22630.5 |
| membrane fusion protein, multidrug efflux system | SAMN03003324_02989 | Not Available | Positive | 3258155 - 3259285 | 40513.4 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN03003324_02990 | Not Available | Positive | 3259297 - 3262461 | 114585.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN03003324_02991 | Not Available | Positive | 3262463 - 3263878 | 51706.4 |
| hypothetical protein | SAMN03003324_02992 | Not Available | Positive | 3263977 - 3264390 | 15631.8 |
| exodeoxyribonuclease i subunit d | SAMN03003324_02993 | Not Available | Positive | 3264450 - 3265673 | 46037.8 |
| exonuclease sbcc | SAMN03003324_02994 | Not Available | Positive | 3265701 - 3269363 | 138189.0 |
| l,d-transpeptidase catalytic domain | SAMN03003324_02995 | Not Available | Negative | 3269366 - 3270166 | 28910.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

