Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, xre-family hth domain | SAMN03003324_02966 | Not Available | Negative | 3233162 - 3233515 | 13338.2 |
| response regulator receiver domain-containing protein | SAMN03003324_02967 | Not Available | Positive | 3233682 - 3234671 | 38085.2 |
| geranylgeranyl diphosphate synthase, type ii | SAMN03003324_02968 | Not Available | Negative | 3234674 - 3235645 | 35979.7 |
| carboxypepd_reg-like domain-containing protein | SAMN03003324_02969 | Not Available | Negative | 3235692 - 3236849 | 43098.7 |
| rnase r | SAMN03003324_02970 | Not Available | Negative | 3236854 - 3238986 | 80847.4 |
| small-conductance mechanosensitive channel | SAMN03003324_02971 | Not Available | Positive | 3239140 - 3240015 | 32951.1 |
| hypothetical protein | SAMN03003324_02972 | Not Available | Positive | 3240115 - 3241428 | 49062.6 |
| glycosyl hydrolases family 43 | SAMN03003324_02973 | Not Available | Positive | 3241515 - 3242468 | 35787.4 |
| acetyltransferase (gnat) domain-containing protein | SAMN03003324_02974 | Not Available | Negative | 3242505 - 3242954 | 17305.5 |
| hypothetical protein | SAMN03003324_02975 | Not Available | Negative | 3243025 - 3243516 | 18371.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

