Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin reductase (nadph) | SAMN03003324_02956 | Not Available | Positive | 3225346 - 3226299 | 34199.5 |
| hypothetical protein | SAMN03003324_02957 | Not Available | Negative | 3226283 - 3226408 | 4752.78 |
| hexosaminidase | SAMN03003324_02958 | Not Available | Positive | 3226476 - 3228368 | 69520.7 |
| hypothetical protein | SAMN03003324_02959 | Not Available | Positive | 3228398 - 3229027 | 23502.8 |
| hypothetical protein | SAMN03003324_02960 | Not Available | Negative | 3229079 - 3229669 | 23163.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02961 | Not Available | Negative | 3229656 - 3230153 | 19583.5 |
| na+/h+-dicarboxylate symporter | SAMN03003324_02962 | Not Available | Positive | 3230283 - 3231668 | 49988.7 |
| hypothetical protein | SAMN03003324_02963 | Not Available | Positive | 3231708 - 3232244 | 20664.9 |
| lsu ribosomal protein l21p | SAMN03003324_02964 | Not Available | Positive | 3232360 - 3232671 | 11321.9 |
| large subunit ribosomal protein l27 | SAMN03003324_02965 | Not Available | Positive | 3232731 - 3233099 | 12848.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

