Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative lumazine-binding | SAMN03003324_02946 | Not Available | Positive | 3216836 - 3217222 | 14452.0 |
| 2,4-dienoyl-coa reductase | SAMN03003324_02947 | Not Available | Positive | 3217301 - 3218374 | 39195.5 |
| hypothetical protein | SAMN03003324_02948 | Not Available | Negative | 3218529 - 3219284 | 26998.3 |
| transcriptional regulator, hxlr family | SAMN03003324_02949 | Not Available | Positive | 3219406 - 3219753 | 13066.0 |
| semialdehyde dehydrogenase, nad binding domain | SAMN03003324_02950 | Not Available | Positive | 3220253 - 3221266 | 36503.8 |
| ketosteroid isomerase-related protein | SAMN03003324_02951 | Not Available | Positive | 3221342 - 3221965 | 23656.4 |
| hypothetical protein | SAMN03003324_02952 | Not Available | Positive | 3222085 - 3222327 | 9484.49 |
| integrase core domain-containing protein | SAMN03003324_02953 | Not Available | Positive | 3222328 - 3222571 | 9225.81 |
| acetyl-coa carboxylase, carboxyltransferase component | SAMN03003324_02954 | Not Available | Positive | 3222958 - 3224586 | 59142.3 |
| antitoxin component ywqk of the ywqjk toxin-antitoxin module | SAMN03003324_02955 | Not Available | Positive | 3224608 - 3225249 | 24549.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

