Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase regulatory-like domain-containing protein | SAMN03003324_02896 | Not Available | Negative | 3168995 - 3172252 | 119792.0 |
| hypothetical protein | SAMN03003324_02897 | Not Available | Negative | 3172604 - 3173014 | 14955.8 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN03003324_02898 | Not Available | Positive | 3173214 - 3174344 | 42627.7 |
| acetyltransferase (gnat) domain-containing protein | SAMN03003324_02899 | Not Available | Positive | 3174316 - 3175218 | 34723.2 |
| predicted fe2+/mn2+ transporter, vit1/ccc1 family | SAMN03003324_02900 | Not Available | Positive | 3175260 - 3175940 | 23692.8 |
| hypothetical protein | SAMN03003324_02901 | Not Available | Positive | 3176081 - 3176272 | 7455.02 |
| hypothetical protein | SAMN03003324_02902 | Not Available | Negative | 3176254 - 3176595 | 13228.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02903 | Not Available | Negative | 3176592 - 3177176 | 22707.2 |
| hypothetical protein | SAMN03003324_02904 | Not Available | Positive | 3177273 - 3177602 | 11931.0 |
| cubico group peptidase, beta-lactamase class c family | SAMN03003324_02905 | Not Available | Positive | 3177657 - 3179309 | 61805.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

