Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction dna helicase subunit ruvb | SAMN03003324_00225 | Not Available | Positive | 239506 - 240528 | 37571.4 |
| predicted amidohydrolase | SAMN03003324_00226 | Not Available | Positive | 240652 - 242160 | 57638.9 |
| hypothetical protein | SAMN03003324_00227 | Not Available | Negative | 242161 - 242472 | 11703.5 |
| epoxyqueuosine reductase | SAMN03003324_00228 | Not Available | Positive | 242554 - 243516 | 36547.6 |
| hypothetical protein | SAMN03003324_00229 | Not Available | Negative | 243503 - 245368 | 70579.5 |
| dna polymerase-3 subunit epsilon | SAMN03003324_00230 | Not Available | Negative | 245473 - 246450 | 36975.1 |
| hypothetical protein | SAMN03003324_00231 | Not Available | Negative | 246491 - 246613 | 4669.04 |
| probable lipoprotein nlpc | SAMN03003324_00232 | Not Available | Negative | 246626 - 247135 | 18976.9 |
| dna mismatch repair protein muts | SAMN03003324_00233 | Not Available | Negative | 247147 - 249756 | 98001.9 |
| chorismate dehydratase | SAMN03003324_00234 | Not Available | Negative | 249847 - 250572 | 26951.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

