Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbp-type peptidyl-prolyl cis-trans isomerase | SAMN03003324_02866 | Not Available | Negative | 3132018 - 3132578 | 20444.8 |
| hypothetical protein | SAMN03003324_02867 | Not Available | Negative | 3132578 - 3133225 | 24629.9 |
| hypothetical protein | SAMN03003324_02868 | Not Available | Negative | 3133247 - 3133870 | 23682.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN03003324_02869 | Not Available | Negative | 3134205 - 3135149 | 35399.5 |
| alpha-ribazole phosphatase | SAMN03003324_02870 | Not Available | Negative | 3135155 - 3135754 | 22313.4 |
| sugar (pentulose or hexulose) kinase | SAMN03003324_02871 | Not Available | Negative | 3135747 - 3137201 | 53006.1 |
| autoinducer 2 (ai-2) kinase | SAMN03003324_02872 | Not Available | Negative | 3137203 - 3138651 | 53757.3 |
| d-3-phosphoglycerate dehydrogenase | SAMN03003324_02873 | Not Available | Negative | 3138656 - 3139633 | 36252.3 |
| polyol permease family | SAMN03003324_02874 | Not Available | Negative | 3139654 - 3140934 | 46629.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_02875 | Not Available | Positive | 3141369 - 3144503 | 114481.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

