Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type lipoprotein export system, atpase component | SAMN03003324_02806 | Not Available | Negative | 3051601 - 3052272 | 25026.2 |
| duplicated orphan permease | SAMN03003324_02807 | Not Available | Negative | 3052290 - 3054680 | 88406.3 |
| macb-like core domain-containing protein | SAMN03003324_02808 | Not Available | Negative | 3054702 - 3057068 | 87917.8 |
| putative abc transport system atp-binding protein | SAMN03003324_02809 | Not Available | Negative | 3057074 - 3057772 | 25762.2 |
| hlyd family secretion protein | SAMN03003324_02810 | Not Available | Negative | 3057789 - 3059033 | 46762.6 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN03003324_02811 | Not Available | Positive | 3059240 - 3060610 | 51324.2 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN03003324_02812 | Not Available | Positive | 3060613 - 3061989 | 52129.3 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paae | SAMN03003324_02813 | Not Available | Positive | 3061994 - 3063046 | 40089.1 |
| glucose-1-phosphate adenylyltransferase | SAMN03003324_02814 | Not Available | Negative | 3063114 - 3064388 | 46844.0 |
| starch synthase | SAMN03003324_02815 | Not Available | Negative | 3064400 - 3065806 | 52769.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

