Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-lactate dehydrogenase complex protein llde | SAMN03003324_00215 | Not Available | Negative | 229679 - 230416 | 27396.7 |
| mfs transporter, umf1 family | SAMN03003324_00216 | Not Available | Negative | 230440 - 231759 | 49189.8 |
| putative auto-transporter adhesin, head gin domain | SAMN03003324_00217 | Not Available | Negative | 231781 - 232491 | 25471.9 |
| atp-dependent dna helicase recq | SAMN03003324_00218 | Not Available | Negative | 232532 - 234424 | 72473.5 |
| hypothetical protein | SAMN03003324_00219 | Not Available | Negative | 234441 - 235631 | 43546.4 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | SAMN03003324_00220 | Not Available | Positive | 235691 - 236830 | 42551.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | SAMN03003324_00221 | Not Available | Positive | 236830 - 237321 | 17213.0 |
| putative transcriptional regulator | SAMN03003324_00222 | Not Available | Negative | 237322 - 237885 | 21125.1 |
| pyridoxamine 5'-phosphate oxidase | SAMN03003324_00223 | Not Available | Positive | 237935 - 238585 | 24613.0 |
| 3-hydroxybutyryl-coa dehydrogenase | SAMN03003324_00224 | Not Available | Positive | 238610 - 239503 | 31898.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

