Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_02646 | Not Available | Positive | 2874680 - 2875069 | 14505.0 |
| alkaline phosphatase | SAMN03003324_02647 | Not Available | Negative | 2875129 - 2876985 | 68469.3 |
| hypothetical protein | SAMN03003324_02648 | Not Available | Negative | 2877081 - 2877236 | 5743.07 |
| glycosyl hydrolases family 2, tim barrel domain | SAMN03003324_02649 | Not Available | Positive | 2877499 - 2878785 | 48080.0 |
| hypothetical protein | SAMN03003324_02650 | Not Available | Negative | 2878858 - 2879232 | 13515.1 |
| two component transcriptional regulator, lyttr family | SAMN03003324_02651 | Not Available | Negative | 2879459 - 2880217 | 29347.5 |
| histidine kinase | SAMN03003324_02652 | Not Available | Negative | 2880229 - 2881302 | 41124.9 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN03003324_02653 | Not Available | Negative | 2881334 - 2882734 | 51470.9 |
| hydrophobe/amphiphile efflux-1 (hae1) family protein | SAMN03003324_02654 | Not Available | Negative | 2882761 - 2885892 | 113792.0 |
| membrane fusion protein, multidrug efflux system | SAMN03003324_02655 | Not Available | Negative | 2885897 - 2887045 | 41870.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

