Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine triad (hit) family protein | SAMN03003324_02625 | Not Available | Positive | 2854297 - 2854707 | 15051.4 |
| ntp pyrophosphatase, house-cleaning of non-canonical ntps | SAMN03003324_02626 | Not Available | Negative | 2854808 - 2855134 | 12299.6 |
| d-tyrosyl-trna(tyr) deacylase | SAMN03003324_02627 | Not Available | Negative | 2855137 - 2855589 | 16507.2 |
| ribosome biogenesis gtpase | SAMN03003324_02628 | Not Available | Negative | 2856079 - 2856999 | 34473.1 |
| aspartate kinase | SAMN03003324_02629 | Not Available | Positive | 2857268 - 2859715 | 89273.5 |
| homoserine kinase | SAMN03003324_02630 | Not Available | Positive | 2859712 - 2860647 | 33157.3 |
| threonine synthase | SAMN03003324_02631 | Not Available | Positive | 2860680 - 2861996 | 48796.4 |
| heat shock protein hslj | SAMN03003324_02632 | Not Available | Negative | 2862008 - 2862445 | 15953.5 |
| 5,10-methylenetetrahydrofolate reductase (nad(p)) | SAMN03003324_02633 | Not Available | Negative | 2862524 - 2863477 | 35637.1 |
| methionine synthase (b12-dependent) | SAMN03003324_02634 | Not Available | Negative | 2863486 - 2867145 | 135679.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

