Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized metal-binding protein yced, duf177 family | SAMN03003324_02605 | Not Available | Negative | 2831842 - 2832393 | 21083.3 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN03003324_02606 | Not Available | Negative | 2832489 - 2833649 | 42219.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_02607 | Not Available | Positive | 2833790 - 2837098 | 122149.0 |
| starch-binding associating with outer membrane | SAMN03003324_02608 | Not Available | Positive | 2837124 - 2838902 | 66813.0 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN03003324_02609 | Not Available | Positive | 2838915 - 2839766 | 31930.8 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | SAMN03003324_02610 | Not Available | Negative | 2840230 - 2840688 | 16413.0 |
| o-acetylserine/cysteine efflux transporter | SAMN03003324_02611 | Not Available | Negative | 2840714 - 2841601 | 31839.6 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN03003324_02612 | Not Available | Negative | 2841693 - 2843108 | 52781.5 |
| peroxiredoxin | SAMN03003324_02613 | Not Available | Negative | 2843176 - 2844321 | 42672.8 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_02614 | Not Available | Positive | 2844447 - 2845358 | 33411.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

