Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_02565 | Not Available | Negative | 2786349 - 2786975 | 23206.2 |
| hypothetical protein | SAMN03003324_02566 | Not Available | Negative | 2787126 - 2787614 | 17197.6 |
| catalase | SAMN03003324_02567 | Not Available | Negative | 2787628 - 2789766 | 79853.9 |
| hypothetical protein | SAMN03003324_02568 | Not Available | Negative | 2790043 - 2790354 | 10884.9 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN03003324_02569 | Not Available | Positive | 2790700 - 2792541 | 67782.0 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SAMN03003324_02570 | Not Available | Negative | 2792926 - 2794854 | 70868.2 |
| glycine hydroxymethyltransferase | SAMN03003324_02571 | Not Available | Positive | 2795022 - 2796293 | 45984.4 |
| pas domain s-box-containing protein | SAMN03003324_02572 | Not Available | Positive | 2796314 - 2799100 | 105949.0 |
| comf family protein | SAMN03003324_02573 | Not Available | Negative | 2799262 - 2799768 | 18716.6 |
| 23s rrna m(2)a-2503 methyltransferase | SAMN03003324_02574 | Not Available | Negative | 2800000 - 2801052 | 39869.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

