Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_02545 | Not Available | Negative | 2763186 - 2765612 | 89948.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02546 | Not Available | Negative | 2765847 - 2766974 | 42526.1 |
| hexapeptide repeat of succinyl-transferase | SAMN03003324_02547 | Not Available | Negative | 2766967 - 2767674 | 25304.8 |
| hypothetical protein | SAMN03003324_02548 | Not Available | Negative | 2767664 - 2769052 | 51827.2 |
| hypothetical protein | SAMN03003324_02549 | Not Available | Negative | 2769049 - 2769987 | 35432.7 |
| putative colanic acid biosysnthesis udp-glucose lipid carrier transferase | SAMN03003324_02550 | Not Available | Positive | 2770090 - 2771481 | 52934.0 |
| pas domain s-box-containing protein | SAMN03003324_02551 | Not Available | Negative | 2771495 - 2772760 | 48955.6 |
| methyltransferase domain-containing protein | SAMN03003324_02552 | Not Available | Negative | 2772832 - 2773416 | 22185.2 |
| nucleotidyl transferase | SAMN03003324_02553 | Not Available | Positive | 2773522 - 2774430 | 33509.1 |
| pas domain s-box-containing protein | SAMN03003324_02554 | Not Available | Positive | 2774435 - 2775658 | 46861.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

