Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide pyruvyl transferase family protein wcak | SAMN03003324_02525 | Not Available | Positive | 2736170 - 2737315 | 44000.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02526 | Not Available | Positive | 2737317 - 2738540 | 46781.9 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02527 | Not Available | Positive | 2738537 - 2739727 | 44815.7 |
| o-antigen ligase like membrane protein | SAMN03003324_02528 | Not Available | Positive | 2739715 - 2741043 | 50905.9 |
| hypothetical protein | SAMN03003324_02529 | Not Available | Positive | 2741040 - 2743118 | 77788.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02530 | Not Available | Positive | 2743122 - 2744165 | 39910.1 |
| udp-n-acetylglucosamine 2-epimerase (non-hydrolysing) | SAMN03003324_02531 | Not Available | Positive | 2744176 - 2745279 | 41271.9 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02532 | Not Available | Positive | 2745315 - 2746553 | 46648.6 |
| ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epsc | SAMN03003324_02533 | Not Available | Positive | 2746786 - 2748720 | 72574.8 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN03003324_02534 | Not Available | Positive | 2748738 - 2750180 | 54533.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

