Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_02515 | Not Available | Positive | 2723548 - 2724201 | 23880.4 |
| capsule assembly protein wzi | SAMN03003324_02516 | Not Available | Positive | 2724210 - 2725901 | 64625.6 |
| capsule assembly protein wzi | SAMN03003324_02517 | Not Available | Positive | 2725913 - 2727613 | 64765.2 |
| tyrosine-protein phosphatase ywqe | SAMN03003324_02518 | Not Available | Negative | 2727649 - 2728377 | 27718.2 |
| polysaccharide export outer membrane protein | SAMN03003324_02519 | Not Available | Positive | 2728437 - 2729318 | 32346.3 |
| capsular exopolysaccharide family | SAMN03003324_02520 | Not Available | Positive | 2729329 - 2731698 | 87874.9 |
| udp-n-acetyl-d-galactosamine dehydrogenase | SAMN03003324_02521 | Not Available | Positive | 2731720 - 2733021 | 47965.6 |
| udp-n-acetylglucosamine 2-epimerase (non-hydrolysing) | SAMN03003324_02522 | Not Available | Positive | 2733028 - 2734194 | 43802.2 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN03003324_02523 | Not Available | Positive | 2734196 - 2735641 | 53599.3 |
| transferase hexapeptide (six repeat-containing protein) | SAMN03003324_02524 | Not Available | Positive | 2735638 - 2736195 | 20558.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

