Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02475 | Not Available | Positive | 2675501 - 2676004 | 19959.8 |
| hypothetical protein | SAMN03003324_02476 | Not Available | Positive | 2675994 - 2676614 | 23738.2 |
| hpp family protein | SAMN03003324_02477 | Not Available | Negative | 2676617 - 2677210 | 22059.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02478 | Not Available | Positive | 2677359 - 2677958 | 23307.1 |
| fecr family protein | SAMN03003324_02479 | Not Available | Positive | 2678043 - 2679275 | 45944.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_02480 | Not Available | Positive | 2679426 - 2682914 | 128518.0 |
| starch-binding associating with outer membrane | SAMN03003324_02481 | Not Available | Positive | 2682926 - 2684731 | 67251.0 |
| alpha-1,2-mannosidase, putative | SAMN03003324_02482 | Not Available | Positive | 2684725 - 2687001 | 85796.7 |
| protein of unknown function | SAMN03003324_02483 | Not Available | Positive | 2687032 - 2689452 | 91046.5 |
| starch-binding associating with outer membrane | SAMN03003324_02484 | Not Available | Negative | 2689517 - 2691151 | 61104.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

