Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyltransferase (gnat) domain-containing protein | SAMN03003324_02435 | Not Available | Negative | 2630651 - 2630914 | 10152.1 |
| protease i | SAMN03003324_02436 | Not Available | Negative | 2631048 - 2631611 | 20174.8 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02437 | Not Available | Negative | 2631774 - 2632523 | 28927.5 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_02438 | Not Available | Negative | 2632536 - 2633810 | 47647.0 |
| methyltransferase domain-containing protein | SAMN03003324_02439 | Not Available | Positive | 2633904 - 2634704 | 31044.6 |
| glycosyl transferase family 2 | SAMN03003324_02440 | Not Available | Negative | 2634709 - 2635620 | 34940.9 |
| hypothetical protein | SAMN03003324_02441 | Not Available | Negative | 2635627 - 2636274 | 24009.7 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN03003324_02442 | Not Available | Negative | 2636271 - 2637590 | 49069.4 |
| dinb superfamily protein | SAMN03003324_02443 | Not Available | Negative | 2637609 - 2638121 | 19529.8 |
| putative hydrolase of the had superfamily | SAMN03003324_02444 | Not Available | Negative | 2638175 - 2638864 | 26463.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

