Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inorganic pyrophosphatase | SAMN03003324_02415 | Not Available | Positive | 2610671 - 2611222 | 20727.7 |
| hemolysin, contains cbs domains | SAMN03003324_02416 | Not Available | Positive | 2611222 - 2612547 | 49447.8 |
| 16s rrna (uracil1498-n3)-methyltransferase | SAMN03003324_02417 | Not Available | Positive | 2612554 - 2613264 | 26402.8 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | SAMN03003324_02418 | Not Available | Positive | 2613309 - 2613788 | 17140.8 |
| hypothetical protein | SAMN03003324_02419 | Not Available | Positive | 2613855 - 2614100 | 8720.38 |
| hypothetical protein | SAMN03003324_02420 | Not Available | Negative | 2614149 - 2615021 | 31790.7 |
| polyisoprenoid-binding protein ycei | SAMN03003324_02421 | Not Available | Negative | 2615031 - 2615561 | 19072.2 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_02422 | Not Available | Negative | 2615637 - 2616230 | 22860.9 |
| hypothetical protein | SAMN03003324_02423 | Not Available | Negative | 2616477 - 2617676 | 45996.2 |
| gmp synthase-glutamine amidotransferase | SAMN03003324_02424 | Not Available | Negative | 2617687 - 2618505 | 30869.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

