Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin reductase (nadph) | SAMN03003324_02355 | Not Available | Negative | 2548507 - 2549517 | 36791.4 |
| udp-2,3-diacylglucosamine hydrolase | SAMN03003324_02356 | Not Available | Positive | 2549717 - 2550511 | 31268.5 |
| bacterial peptide chain release factor 1 (brf-1) | SAMN03003324_02357 | Not Available | Positive | 2550645 - 2551718 | 40561.3 |
| Trna-asp | Not Available | Not Available | Positive | 2551807 - 2551883 | Not Available |
| alpha-l-fucosidase | SAMN03003324_02359 | Not Available | Negative | 2552052 - 2553698 | 61946.0 |
| helix-turn-helix domain-containing protein | SAMN03003324_02360 | Not Available | Positive | 2553937 - 2554728 | 30618.9 |
| Trna-asp | Not Available | Not Available | Positive | 2554999 - 2555072 | Not Available |
| two component transcriptional regulator, lyttr family | SAMN03003324_02362 | Not Available | Negative | 2555163 - 2555915 | 28502.6 |
| histidine kinase | SAMN03003324_02363 | Not Available | Negative | 2555912 - 2556952 | 40018.9 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN03003324_02364 | Not Available | Positive | 2557129 - 2559729 | 94110.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

