Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mrna interferase higb | SAMN03003324_02342 | Not Available | Negative | 2542283 - 2542594 | 12121.5 |
| hypothetical protein | SAMN03003324_02343 | Not Available | Positive | 2542701 - 2542847 | 5641.94 |
| rna-directed dna polymerase | SAMN03003324_02346 | Not Available | Positive | 2543637 - 2543870 | 8556.65 |
| group ii intron reverse transcriptase/maturase | SAMN03003324_02347 | Not Available | Positive | 2543845 - 2544897 | 40938.7 |
| hypothetical protein | SAMN03003324_02349 | Not Available | Negative | 2545136 - 2545588 | 17610.3 |
| atpase/gtpase, aaa15 family | SAMN03003324_02350 | Not Available | Negative | 2545581 - 2547056 | 56008.4 |
| helix-turn-helix domain-containing protein | SAMN03003324_02351 | Not Available | Positive | 2547089 - 2547531 | 16904.3 |
| glucosamine-6-phosphate deaminase | SAMN03003324_02352 | Not Available | Negative | 2547532 - 2547695 | 6066.39 |
| hypothetical protein | SAMN03003324_02353 | Not Available | Positive | 2547878 - 2548093 | 8314.1 |
| ferredoxin, 2fe-2s | SAMN03003324_02354 | Not Available | Negative | 2548177 - 2548503 | 11751.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

