Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-lactamase | SAMN03003324_02322 | Not Available | Negative | 2522547 - 2523104 | 20719.2 |
| hypothetical protein | SAMN03003324_02323 | Not Available | Negative | 2523222 - 2523473 | 9413.93 |
| uncharacterized protein yjbi, contains pentapeptide repeats | SAMN03003324_02324 | Not Available | Positive | 2523626 - 2524219 | 22540.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02325 | Not Available | Positive | 2524334 - 2524930 | 23050.1 |
| fecr family protein | SAMN03003324_02326 | Not Available | Positive | 2525005 - 2525991 | 36895.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_02327 | Not Available | Positive | 2526164 - 2528938 | 105893.0 |
| choloylglycine hydrolase | SAMN03003324_02328 | Not Available | Positive | 2529193 - 2530377 | 43883.6 |
| uncharacterized conserved protein, contains gh25 family domain | SAMN03003324_02329 | Not Available | Negative | 2530469 - 2531182 | 26174.0 |
| hypothetical protein | SAMN03003324_02330 | Not Available | Negative | 2531224 - 2532474 | 46036.3 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_02331 | Not Available | Negative | 2532501 - 2534879 | 89801.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

