Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_02302 | Not Available | Positive | 2504683 - 2504970 | 11177.0 |
| nudix-type nucleoside diphosphatase, yffh/adpp family | SAMN03003324_02303 | Not Available | Positive | 2504997 - 2505596 | 22544.1 |
| lycopene beta-cyclase | SAMN03003324_02304 | Not Available | Negative | 2505619 - 2506767 | 43689.5 |
| monovalent cation:h+ antiporter, cpa1 family | SAMN03003324_02305 | Not Available | Positive | 2506917 - 2508530 | 60256.2 |
| acyl-coa thioester hydrolase | SAMN03003324_02306 | Not Available | Negative | 2508580 - 2508972 | 15181.4 |
| hypothetical protein | SAMN03003324_02307 | Not Available | Negative | 2509001 - 2509465 | 17848.2 |
| 6-phosphogluconate dehydrogenase | SAMN03003324_02308 | Not Available | Positive | 2509557 - 2511011 | 52960.6 |
| hypothetical protein | SAMN03003324_02309 | Not Available | Positive | 2511252 - 2511653 | 15235.5 |
| multicopper oxidase with three cupredoxin domains (includes cell division protein ftsp and spore coat protein cota) | SAMN03003324_02310 | Not Available | Positive | 2511728 - 2513902 | 83860.7 |
| transcriptional regulator, hxlr family | SAMN03003324_02311 | Not Available | Positive | 2514008 - 2514337 | 12683.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

