Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | SAMN03003324_02241 | Not Available | Negative | 2442666 - 2443694 | 39883.8 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN03003324_02242 | Not Available | Negative | 2443678 - 2444868 | 46793.8 |
| acetyl esterase/lipase | SAMN03003324_02243 | Not Available | Positive | 2445028 - 2445891 | 31698.7 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_02244 | Not Available | Positive | 2445894 - 2446433 | 20966.6 |
| nadph:quinone reductase | SAMN03003324_02245 | Not Available | Positive | 2446510 - 2447478 | 33945.1 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN03003324_02246 | Not Available | Negative | 2447596 - 2448225 | 22587.4 |
| signal transduction histidine kinase | SAMN03003324_02247 | Not Available | Positive | 2448400 - 2450148 | 65063.7 |
| probable oxidoreductase, llm family | SAMN03003324_02248 | Not Available | Positive | 2450236 - 2451267 | 37623.2 |
| putative auto-transporter adhesin, head gin domain | SAMN03003324_02249 | Not Available | Negative | 2451329 - 2452084 | 27996.8 |
| excinuclease abc subunit a | SAMN03003324_02250 | Not Available | Negative | 2452297 - 2454843 | 92938.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

