Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferritin | SAMN03003324_02201 | Not Available | Positive | 2401534 - 2402067 | 20752.4 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN03003324_02202 | Not Available | Negative | 2402198 - 2403193 | 35601.8 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN03003324_02203 | Not Available | Negative | 2403194 - 2403961 | 28725.7 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN03003324_02204 | Not Available | Negative | 2403974 - 2404780 | 29556.0 |
| lysophospholipase l1 | SAMN03003324_02205 | Not Available | Positive | 2405071 - 2405742 | 25604.1 |
| c-terminal processing protease ctpa/prc, contains a pdz domain | SAMN03003324_02206 | Not Available | Positive | 2405778 - 2409026 | 121028.0 |
| protein of unknown function | SAMN03003324_02207 | Not Available | Negative | 2409101 - 2412301 | 122168.0 |
| dna-binding transcriptional regulator, padr family | SAMN03003324_02208 | Not Available | Negative | 2412298 - 2412639 | 12899.7 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN03003324_02209 | Not Available | Positive | 2412952 - 2413551 | 20811.7 |
| organic hydroperoxide reductase osmc/ohra | SAMN03003324_02210 | Not Available | Positive | 2413671 - 2414186 | 18713.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

