Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN03003324_02191 | Not Available | Positive | 2392479 - 2393156 | 25978.9 |
| two component transcriptional regulator, lyttr family | SAMN03003324_02192 | Not Available | Negative | 2393216 - 2393923 | 27380.3 |
| histidine kinase | SAMN03003324_02193 | Not Available | Negative | 2393920 - 2394981 | 40795.2 |
| histidine kinase | SAMN03003324_02194 | Not Available | Negative | 2394981 - 2396009 | 40026.1 |
| carboxypepd_reg-like domain-containing protein | SAMN03003324_02195 | Not Available | Negative | 2396041 - 2398551 | 94160.9 |
| hypothetical protein | SAMN03003324_02196 | Not Available | Positive | 2398886 - 2399095 | 7094.64 |
| hypothetical protein | SAMN03003324_02197 | Not Available | Positive | 2399122 - 2399811 | 26694.9 |
| Trna-ser | Not Available | Not Available | Positive | 2400177 - 2400264 | Not Available |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN03003324_02199 | Not Available | Negative | 2400386 - 2400886 | 19247.2 |
| hypothetical protein | SAMN03003324_02200 | Not Available | Positive | 2401007 - 2401429 | 16045.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

