Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN03003324_02181 | Not Available | Positive | 2382081 - 2382494 | 15681.7 |
| uncharacterized membrane protein ykgb | SAMN03003324_02182 | Not Available | Positive | 2382825 - 2383244 | 15436.8 |
| predicted transcriptional regulator | SAMN03003324_02183 | Not Available | Positive | 2383333 - 2383695 | 13829.6 |
| n-acetylmuramoyl-l-alanine amidase | SAMN03003324_02184 | Not Available | Positive | 2383698 - 2385161 | 55414.6 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_02185 | Not Available | Positive | 2385171 - 2387555 | 90205.6 |
| hypothetical protein | SAMN03003324_02186 | Not Available | Positive | 2387667 - 2388104 | 16631.2 |
| hypothetical protein | SAMN03003324_02187 | Not Available | Positive | 2388146 - 2388274 | 4918.11 |
| hypothetical protein | SAMN03003324_02188 | Not Available | Negative | 2388278 - 2388490 | 7765.52 |
| carboxypepd_reg-like domain-containing protein | SAMN03003324_02189 | Not Available | Negative | 2388671 - 2391040 | 88991.3 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN03003324_02190 | Not Available | Positive | 2391187 - 2392482 | 47780.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

