Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ankyrin repeat-containing protein | SAMN03003324_02171 | Not Available | Positive | 2369042 - 2370226 | 45107.2 |
| ankyrin repeat | SAMN03003324_02172 | Not Available | Positive | 2370238 - 2371542 | 47473.0 |
| hypothetical protein | SAMN03003324_02173 | Not Available | Positive | 2371570 - 2372091 | 18520.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02174 | Not Available | Positive | 2372207 - 2372770 | 22113.8 |
| fecr family protein | SAMN03003324_02175 | Not Available | Positive | 2372871 - 2373869 | 37912.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_02176 | Not Available | Positive | 2374010 - 2377459 | 126984.0 |
| starch-binding associating with outer membrane | SAMN03003324_02177 | Not Available | Positive | 2377476 - 2378933 | 55040.2 |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN03003324_02178 | Not Available | Positive | 2378979 - 2380208 | 46617.4 |
| nadph:quinone reductase | SAMN03003324_02179 | Not Available | Positive | 2380316 - 2381254 | 33627.6 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_02180 | Not Available | Positive | 2381415 - 2381978 | 22044.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

