Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-carotene 3-hydroxylase | SAMN03003324_02151 | Not Available | Negative | 2348135 - 2348608 | 18754.9 |
| isopentenyl-diphosphate delta-isomerase | SAMN03003324_02152 | Not Available | Negative | 2348601 - 2349131 | 20257.9 |
| hypothetical protein | SAMN03003324_02153 | Not Available | Negative | 2349124 - 2349630 | 19323.5 |
| phytoene/squalene synthetase | SAMN03003324_02154 | Not Available | Negative | 2349627 - 2350463 | 32265.1 |
| phytoene desaturase | SAMN03003324_02155 | Not Available | Negative | 2350447 - 2351955 | 56926.4 |
| merr hth family regulatory protein | SAMN03003324_02156 | Not Available | Negative | 2351945 - 2352844 | 34552.0 |
| methylisocitrate lyase | SAMN03003324_02157 | Not Available | Positive | 2353129 - 2354034 | 32481.7 |
| 2-methylcitrate synthase | SAMN03003324_02158 | Not Available | Positive | 2354024 - 2355178 | 42458.6 |
| 2-methylcitrate dehydratase | SAMN03003324_02159 | Not Available | Positive | 2355183 - 2356634 | 53722.4 |
| acetyl-coa hydrolase | SAMN03003324_02160 | Not Available | Positive | 2356877 - 2358397 | 54910.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

