Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | SAMN03003324_02141 | Not Available | Negative | 2338323 - 2339375 | 41262.1 |
| hypothetical protein | SAMN03003324_02142 | Not Available | Negative | 2339414 - 2339608 | 7300.71 |
| protein of unknown function | SAMN03003324_02143 | Not Available | Negative | 2339759 - 2340988 | 46659.3 |
| hypothetical protein | SAMN03003324_02144 | Not Available | Negative | 2341013 - 2341666 | 24631.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02145 | Not Available | Negative | 2341732 - 2342277 | 21268.8 |
| tldd protein | SAMN03003324_02146 | Not Available | Positive | 2342482 - 2344122 | 60055.1 |
| predicted zn-dependent protease or its inactivated homolog | SAMN03003324_02147 | Not Available | Positive | 2344126 - 2345463 | 48477.5 |
| mfs transporter, fsr family, fosmidomycin resistance protein | SAMN03003324_02148 | Not Available | Negative | 2345597 - 2346826 | 44367.6 |
| dna-binding transcriptional regulator, fadr family | SAMN03003324_02149 | Not Available | Negative | 2346863 - 2347519 | 24591.7 |
| putative membrane protein | SAMN03003324_02150 | Not Available | Positive | 2347664 - 2348032 | 13298.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

