Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| low affinity fe/cu permease | SAMN03003324_02131 | Not Available | Positive | 2322447 - 2322896 | 16880.2 |
| asma protein | SAMN03003324_02132 | Not Available | Negative | 2322893 - 2325979 | 114837.0 |
| gaf domain-containing protein | SAMN03003324_02133 | Not Available | Positive | 2326340 - 2327542 | 44635.9 |
| peroxiredoxin | SAMN03003324_02134 | Not Available | Positive | 2327618 - 2328088 | 17177.3 |
| thioredoxin | SAMN03003324_02135 | Not Available | Positive | 2328106 - 2328633 | 19414.6 |
| two component transcriptional regulator, lyttr family | SAMN03003324_02136 | Not Available | Positive | 2328717 - 2329466 | 28970.7 |
| histidine kinase | SAMN03003324_02137 | Not Available | Positive | 2329466 - 2331421 | 74755.9 |
| abc-type transport system, involved in lipoprotein release, permease component | SAMN03003324_02138 | Not Available | Positive | 2331951 - 2334320 | 88750.0 |
| thiopeptide-type bacteriocin biosynthesis domain-containing protein | SAMN03003324_02139 | Not Available | Positive | 2334443 - 2337607 | 121844.0 |
| two component transcriptional regulator, lyttr family | SAMN03003324_02140 | Not Available | Negative | 2337604 - 2338326 | 27244.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

